According to Ukrinform, Vitaliy Buyalskyi scored an opener in the 57th minute. Attila Szalai equalized in the 89th minute. In extra time, Oleksandr Karavayev made it 2-1 in the 114th minute.
Fenerbahce midfielder Ismail Yüksek was sent off in the 54th minute.
Forward Enner Valencia did not convert a penalty in the 70th minute.
The first leg between the two clubs a week ago ended in a goalless draw.
In the third qualifying round, Dynamo will take on Austria's Sturm.
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